BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016E02SP1|AL427015
(588 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1684 886 0.0
>3x_Contig1684
Length = 14609
Score = 886 bits (444), Expect = 0.0
Identities = 559/588 (95%), Gaps = 13/588 (2%)
Strand = Plus / Plus
Query: 1 agtattgatattctacttattatgggatatctgacagtttcgtctggtgtaggtagagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 agtattgatattctacttattatgggatatctgacagtttcgtctggtgtaggtagagtt 1536
Query: 61 tattgtgctgattcaattagacagacgggattgttgttagaaagagtgggaaaagtgacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 tattgtgctgattcaattagacagacgggattgttgttagaaagagtgggaaaagtgacg 1596
Query: 121 tgcacagcgcggtgtttgggtggaacatgggcagcagatctattacccggataatatgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 tgcacagcgcggtgtttgggtggaacatgggcagcagatctattacccggataatatgcg 1656
Query: 181 ggtcatgagttctaatgatacaccattacccgaatattaatcaccttttggcgcaccgtg 240
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct: 1657 ggtcatgagttctaatgatacac-attacccgaatattaata--cttttggcgcac-gtg 1712
Query: 241 atccagaaagtgatttctttttccattcctccttcctgattcgaggtccgggtaatattt 300
||| ||||||||||||||||||| |||| |||| |||| |||||||||||||||||||
Sbjct: 1713 atc-agaaagtgatttctttttc-attct--cttc-tgat-cgaggtccgggtaatattt 1766
Query: 301 tggaaaatctttttgacaatactcttagtgctgtgtggcaggaaaggttgtatccaggaa 360
|||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 tggaaaat-tttttga-aata-tcttagtgctgtgtggcaggaaaggttgtatccaggaa 1823
Query: 361 agaaatttggaaaaaaaaagtatcagtgaaaactttaaagcgatgagatgagatggggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1824 agaaatttggaaaaaaaaagtatcagtgaaaactttaaagcgatgagatgagatgaggta 1883
Query: 421 aagrgaaacgaggtncatccttmcmtcattatcmtagggtatcgttcccycctttgtatc 480
||| |||||||||| ||| ||| | |||||||| ||| ||||||||||| ||||||||||
Sbjct: 1884 aagagaaacgaggtacatacttacatcattatcatagtgtatcgttccctcctttgtatc 1943
Query: 481 agaaaacagctaatactaataatttttggntaaaattatccgaactatggcgttacaaat 540
||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct: 1944 agaaaacagctaatactaataatttgtggataaaattatccgtactatggcgttacaaat 2003
Query: 541 ctcaaaggaagacactcaggggttattgaaagataagaatgtatkgat 588
|||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 2004 ctcaaaggaagacactcaggtgttattgaaagataagaatgtattgat 2051
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5460
Number of Sequences: 1807
Number of extensions: 5460
Number of successful extensions: 392
Number of sequences better than 1.0e-20: 1
length of query: 588
length of database: 10,358,551
effective HSP length: 16
effective length of query: 572
effective length of database: 10,329,639
effective search space: 5908553508
effective search space used: 5908553508
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)